GENIA Treebank Beta

registration: 2007/10/23 03:25:18, last modified: 2008/11/10 04:14:55
title
  • GENIA Treebank Beta
title.abbreviation
title.alternative
creator
  • researcher
  • http://www-tsujii.is.s.u-tokyo.ac.jp/%7Egenia/members.html
  • Jun-ichi Tsujii(http://www-tsujii.is.s.u-tokyo.ac.jp/~tsujii/)
  • Yuka Tateishi(http://www-tsujii.is.s.u-tokyo.ac.jp/~yucca/)
  • Tomoko Ohta(okap@is.s.u-tokyo.ac.jp)
  • Jin-Dong Kim(jdkim@is.s.u-tokyo.ac.jp)
  • Yoshimasa Tsuruoka
  • Jun'ichi Kazama(http://www-tsujii.is.s.u-tokyo.ac.jp/~kazama/)(kazama@is.s.u-tokyo.ac.jp)
  • Akane Yakushiji(http://www-tsujii.is.s.u-tokyo.ac.jp/~akane/)
  • Tsujii Laboratory, Department of Information Science, Faculty of Science, University of Tokyo(http://www-tsujii.is.s.u-tokyo.ac.jp/)
subject
  • sytactically annotated corpus
subject.linguisticField
  • computational_linguistics
subject.monoMultilingual
  • monolingual
subject.resourceSubject
  • corpus
description
  • GENIA Treebank Beta is a syntactically bracketed corpus of abstracts taken from National Library of Medicine's MEDLINE database and tagged in (almost) PennTreeBank style. The base abstracts are selected from the search results with keywords (MeSH terms) Human, Blood Cells, and Transcription Factors.
description.price *This metadata is only as a guide
  • (probably)free for research purpose
description.language
  • English
description.inputDevice
description.inputEnvironment
description.speakingStyle
description.speechMode
description.samplingRate
description.additionalData
publisher
contributor
contributor.attribute.author.motherTongue
  • native mix of non-native(scientists from various countries) and native
  • non_native
contributor.attribute.author.dialect
  • standard_dialect mix of dialect(scientists from various countries) and standard dialect
  • dialect
contributor.attribute.author.level
  • amateur
contributor.attribute.author.age
  • adult
contributor.attribute.author.gender
  • male
  • female
contributor.attribute.speaker.motherTongue
contributor.attribute.speaker.dialect
contributor.attribute.speaker.level
contributor.attribute.speaker.age
contributor.attribute.speaker.gender
contributor.attribute.speaker.number
date.created
  • 1999-00-00 2003-00-00
date.issued
  • 2003-00-00
date.modified
type
  • Text
type.discourseType
  • report
type.linguisticType
  • primary_text
type.purpose
  • developing_technologies to provide reference materials to let NLP techniques work for bio-textmining
type.style
  • written paper
type.form
  • unfixed
type.sentence
  • short
  • long
type.annotation
  • annotated
type.annotationSample
  • [Basic structure]
    (Non-null elements): element
    (Null elements): e.g.

    [Function tags for case element are attached within the element tags with "-"]
    -SBJ: e.g.
    -PRD: e.g.
    -DTV: e.g.

    [Attributes]
    Attribute value: Description
    (Null types: Attribute name:NULL)
    NONE: "*" in PTB
    Zero: "0" in PTB
    QSTN: "*?*" in PTB
    T: "*T*" in PTB
    (Adverbial function tags: Attribute name:SEM)
    TMP: e.g. today
    (Other function tags: Attribute name:FCTN)
    CLF: It is..that..sentense
    HLN: Headline
    VOC: Vocative
    TPC: Vopicalized element
    (Coordination: Attribute name:SYN, Attribute value:COOD)
    COOD: coordination
    (Comments: Attribute name:UNSURE)
    Element_Name: unsure about the name of elements
    Range: unsure about the range of elements
    Case: unsure about the case elements as SBJ
    Internal_Structure: unsure about bracketing
    Function: unsure about the function tags
    NullType: unsure about the null elements
    Coindex: unsure about the coindex to the null elements
    Null: unsure about the null elements process
    Over_All: in case the original text is not understandable
    Other: others
    (Text error: when there’s error in the original text, Attribute name:TXTERR)
    Spell: spelling error
    Grammar: grammatical error
    Should_Be_Divided: two sentences not divided
    Should_Be_Concatenated: one sentence not concatenated
    Other: others
    (Other comments: Attribute name:COMMENT)
    free text in English

    "PennTree tag set" can be found in the "Bracketing Guidelines for Treebank II Style" manual of Penn Treebank Project:
    http://www.cis.upenn.edu/~treebank/home.html
    http://www-tsujii.is.s.u-tokyo.ac.jp/~genia/topics/Corpus/manual-for-bracketing.html
type.sample
format.extent
  • 500 abstracts
format.medium
format.encoding
  • ShiftJIS
format.markup
  • XML (.gda files)
  • PTB (.tree files)
format.functionality
identifier
identifier.doi
identifier.islrn
source
  • National Library of Medicine's MEDLINE database
language
  • English
language.area
  • Europe
relation
  • hasVersion C-001699: GENIA Corpus Version 3.02
  • hasVersion GENIA Corpus Version 3.02p
  • isPartOf C-001701: GENIA Corpus
  • isReferencedBy 生命科学分野のタグ付きコーパス:GENIAコーパスの設計と作成(http://www-tsujii.is.s.u-tokyo.ac.jp/~okap/papers/NLP2005_S2-7.pdf)
  • isReferencedBy ゲノムテキストからの知識の抽出と体系化,大田朋子東京大学大学院情報理工学系研究科(http://www-tsujii.is.s.u-tokyo.ac.jp/GENIA/WS/PDFfiles/Ohta-Symp.pdf)
  • conformsTo C-001546: Treebank-2
relation.utilization *This metadata is automatically extracted
coverage.temporal
  • 1990-1999
coverage.spacial
rights